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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84186867_84187430_R

Intron Information:

Intron Rank:
143293
Intron Class:
major
Intron Phase:
Intron Coordinates:
84186867 - 84187430
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTTCCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
73.4
0.53
0.9
70
35.9
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
72.1
0.77
1.8
92.57
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024412
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030539
84186572 - 84188086
1515