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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84186867_84187574_R

Intron Information:

Intron Rank:
143294
Intron Class:
major
Intron Phase:
Intron Coordinates:
84186867 - 84187574
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTTCCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
73.4
0.53
0.9
70
35.9
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
72.1
0.77
1.8
92.57
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024412
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032704
84186572 - 84188086
1515