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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84187652_84187908_R

Intron Information:

Intron Rank:
143295
Intron Class:
major
Intron Phase:
Intron Coordinates:
84187652 - 84187908
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGTGTTTT
5'SS Class:
major
3'SS Sequence:
ATATTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCTTACTGATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
0.9
79.4
29.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
83.1
0.75
0.8
78
35.6
Minor 5ss
48.5
-0.1
2.7
66.5
39
Minor BPS
45.5
-0.3
2.1
60.03
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024412
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032704
84186572 - 84188086
1515