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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84234047_84234196_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
84234047 - 84234196
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATA|GCACTTTTA
5'SS Class:
weak_major
3'SS Sequence:
CATGGAATATGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TGAGCATGGAAT
Flanking Amino Acid:
SPMVSFGGVHMCTCGYPSAL
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.1
0
1.3
54.4
39.3
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
44.3
-0.3
1.7
45.3
44.5
Minor 5ss
34.3
-1.8
4.2
50
42
Minor BPS
43.6
-0.4
1.9
60.1
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018216
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024070
84232818 - 84234318
1501