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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84283425_84283977_F

Intron Information:

Intron Rank:
150010
Intron Class:
major
Intron Phase:
Intron Coordinates:
84283425 - 84283977
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTACTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TCTTTTGTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
81
0.7
0.8
78.7
34.8
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
47.5
-0.1
2.2
69.97
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030672
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027930
84283204 - 84315366
32163