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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84327505_84331314_F

Intron Information:

Intron Rank:
125743
Intron Class:
major
Intron Phase:
Intron Coordinates:
84327505 - 84331314
Intron Length:
3810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATG
5'SS Class:
strong_major
3'SS Sequence:
GTTATCCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTCTGTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
68.7
0.42
1
60.3
41.4
Minor 5ss
43.2
-0.7
2.9
57.1
47.2
Minor BPS
47.5
-0.2
2.2
64.08
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017732
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019030
84327454 - 84332658
5205