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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84345379_84355171_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84345379 - 84355171
Intron Length:
9793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATGTCTAAACT
Flanking Amino Acid:
RTLIMAASNQQHSGMKFSMK
Intron Amino Acid Position:
741

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
34.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
37.8
-1.4
3.3
51.1
45.6
Minor BPS
63.3
0.49
1.8
80.35
41.7

Associated Gene:

Gene:
TENT4A
Ensembl Gene ID:
ENSAPLG00000011309
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034137
84344750 - 84402736
57987