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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84367480_84375941_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84367480 - 84375941
Intron Length:
8462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTAGT
5'SS Class:
strong_major
3'SS Sequence:
AAAATTTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TAATACTTAATT
Flanking Amino Acid:
ARSYPNRDSESTLGRIIKVT
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.7
34.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
70.1
0.45
1
66.9
43.8
Minor 5ss
37.5
-1.4
2.8
52.1
44.3
Minor BPS
73.1
0.8
1.4
83.55
36.8

Associated Gene:

Gene:
TENT4A
Ensembl Gene ID:
ENSAPLG00000011309
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034137
84344750 - 84402736
57987
ENSAPLT00000011799
84344750 - 84402736
57987