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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84384654_84386115_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84384654 - 84386115
Intron Length:
1462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTAACCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTGTTTTAACC
Flanking Amino Acid:
YSIKVLDKATVPIIKLTDQE
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
81.8
31.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.7
0.69
0.9
77.5
36.4
Minor 5ss
36.5
-1.5
2.7
46.6
41.8
Minor BPS
68.2
0.55
1.4
72.92
38.9

Associated Gene:

Gene:
TENT4A
Ensembl Gene ID:
ENSAPLG00000011309
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034137
84344750 - 84402736
57987
ENSAPLT00000011799
84344750 - 84402736
57987