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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84387163_84388568_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84387163 - 84388568
Intron Length:
1406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GCATTCATAAGT
Flanking Amino Acid:
VIKDLWPTADVQIFGSFSTG
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.6
28.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
33.2
-1.9
3.4
44.6
43.6
Minor BPS
49.2
0.02
1.9
66
44.3

Associated Gene:

Gene:
TENT4A
Ensembl Gene ID:
ENSAPLG00000011309
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034137
84344750 - 84402736
57987
ENSAPLT00000011799
84344750 - 84402736
57987