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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84421067_84422502_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84421067 - 84422502
Intron Length:
1436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GCATTTGTACCT
Flanking Amino Acid:
ILGSRAKQHHQWYLEKFEDY
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
44.3
-0.3
2.2
60.13
44

Associated Gene:

Gene:
SRD5A1
Ensembl Gene ID:
ENSAPLG00000011481
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011948
84421000 - 84428591
7592