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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84422654_84424164_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84422654 - 84424164
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTCCTGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGCTTTTCAAAT
Flanking Amino Acid:
PGETGYKIPRGGMFEYVSGA
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72.7
0.51
0.9
69.4
36.9
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
53.3
0.18
1.6
69.61
41.4

Associated Gene:

Gene:
SRD5A1
Ensembl Gene ID:
ENSAPLG00000011481
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011948
84421000 - 84428591
7592