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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84424258_84427699_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84424258 - 84427699
Intron Length:
3442

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAA|GCCACTGCA
5'SS Class:
major
3'SS Sequence:
TCAGGTTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGTATTTTAAAT
Flanking Amino Acid:
KDPCFIAGELRWLVGMAINI
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.3
65.5
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.1
0.48
0.9
64.6
41.2
Minor 5ss
25.3
-2.8
3.9
33.1
35.5
Minor BPS
60.4
0.41
1.4
72.92
37.5

Associated Gene:

Gene:
SRD5A1
Ensembl Gene ID:
ENSAPLG00000011481
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011948
84421000 - 84428591
7592