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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84427876_84427982_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84427876 - 84427982
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGT
5'SS Class:
major
3'SS Sequence:
CGGTTCGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTGGAT
U12 Branch Point Sequence:
GGTTCGTTACAG
Flanking Amino Acid:
LGGFVLHYLHRALIFPFLIR
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68
43.2
Major BPS
48.6
-0
1.4
48.7
45.1
Major PPT
71.9
0.49
1
64.3
41.5
Minor 5ss
29.9
-2.3
3.8
46.9
48.5
Minor BPS
45
-0.5
2.4
54.2
46.2

Associated Gene:

Gene:
SRD5A1
Ensembl Gene ID:
ENSAPLG00000011481
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011948
84421000 - 84428591
7592