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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84428931_84429023_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84428931 - 84429023
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCCCG
5'SS Class:
major
3'SS Sequence:
CGCTGCGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CCTCTCTCACCT
Flanking Amino Acid:
QEVEMPQPLSWYPEELAWHT
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.56
1
55
43.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
61
0.25
1
52.6
36.9
Minor 5ss
32.9
-2
3
36.9
41.3
Minor BPS
48
-0
1.9
64.73
45.8

Associated Gene:

Gene:
NSUN2
Ensembl Gene ID:
ENSAPLG00000011518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012079
84428404 - 84446867
18464