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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84432292_84432650_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
84432292 - 84432650
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTGC
5'SS Class:
weak_major
3'SS Sequence:
ACTTCTGTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ATGTGTTCGACT
Flanking Amino Acid:
YDRILCDVPCSGDGTMRKNI
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
65.8
41.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
78.3
0.64
0.9
69.2
41.2
Minor 5ss
57.7
0.26
2
70.7
39.7
Minor BPS
48.5
-0
2
69.06
42.4

Associated Gene:

Gene:
NSUN2
Ensembl Gene ID:
ENSAPLG00000011518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012079
84428404 - 84446867
18464