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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84432726_84433746_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84432726 - 84433746
Intron Length:
1021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAACAAAT
5'SS Class:
major
3'SS Sequence:
AATGTTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TAGACCAAAAAT
Flanking Amino Acid:
WTTQNSLQLHGLQLRIATRG
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
71.6
40.1
Major BPS
69.6
0.49
1
59.5
39
Major PPT
74.2
0.54
0.9
70.9
40
Minor 5ss
40.2
-1.1
3
49.8
46.3
Minor BPS
45.8
-0.2
2
64.54
44.9

Associated Gene:

Gene:
NSUN2
Ensembl Gene ID:
ENSAPLG00000011518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012079
84428404 - 84446867
18464