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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84433878_84436950_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84433878 - 84436950
Intron Length:
3073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TCTGACATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTTTTCAAAAAT
Flanking Amino Acid:
VIAALLEKSQGALELADVSS
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
80.6
33.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
73.2
0.52
1
62.8
42.7
Minor 5ss
31.6
-2.1
3
39.4
46.1
Minor BPS
49.5
0.04
2
74.72
41.6

Associated Gene:

Gene:
NSUN2
Ensembl Gene ID:
ENSAPLG00000011518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012079
84428404 - 84446867
18464