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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84441499_84442001_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84441499 - 84442001
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
TTTTGCTAAAAT
Flanking Amino Acid:
TEQSKKGGVCGPPPSKKMKM
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.5
35.6
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
80.6
0.69
0.8
78.2
35.7
Minor 5ss
30.3
-2.3
3.3
33.4
42
Minor BPS
59.5
0.38
2.2
85.06
41.4

Associated Gene:

Gene:
NSUN2
Ensembl Gene ID:
ENSAPLG00000011518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012079
84428404 - 84446867
18464