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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84442674_84444010_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84442674 - 84444010
Intron Length:
1337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTGCCATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TACTCTTTAATG
Flanking Amino Acid:
VLLNNSEKMKVINTGIKVWS
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
75.6
34.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.6
0.67
0.9
73.5
35.9
Minor 5ss
47.4
-0.3
3.1
66.9
44.7
Minor BPS
71.8
0.55
1.3
68.01
40.3

Associated Gene:

Gene:
NSUN2
Ensembl Gene ID:
ENSAPLG00000011518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012079
84428404 - 84446867
18464