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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84444092_84444319_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84444092 - 84444319
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
ATCTATTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTATCT
Flanking Amino Acid:
FGCAFRLAQEGIYTLYPFIH
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.4
0.57
1
69.3
40.1
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
62.6
0.47
1.8
81.83
39.5

Associated Gene:

Gene:
NSUN2
Ensembl Gene ID:
ENSAPLG00000011518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012079
84428404 - 84446867
18464