Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84444459_84445479_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

84444459 - 84445479

Intron Length:

1021

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

CACCATGCCCTAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GACACAT

U12 Branch Point Sequence:

TCCCCCCTCACC

Flanking Amino Acid:

SETQKKVKDMAMGSIVLKYD

Intron Amino Acid Position:

681

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.8

38.5

Major BPS

52.1

0.05

1.2

37.5

Major PPT

55.9

0.13

0.9

46.2

35.9

Minor 5ss

39.7

-1.2

3.1

51.1

45.2

Minor BPS

47.9

-0.1

2.1

60.5

44.7

Associated Gene:

Gene:

NSUN2

Ensembl Gene ID:

ENSAPLG00000011518

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012079

84428404 - 84446867

18464