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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84445520_84446145_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84445520 - 84446145
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TGCTTGTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
CTTTTCCTAGTT
Flanking Amino Acid:
SIVLKYDPDPEKPDELQCPI
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
69.1
0.48
1
70
32.1
Major PPT
77.8
0.63
0.9
72.8
37.5
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
53.6
0.19
1.9
75.93
41.3

Associated Gene:

Gene:
NSUN2
Ensembl Gene ID:
ENSAPLG00000011518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012079
84428404 - 84446867
18464