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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84506043_84507685_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84506043 - 84507685
Intron Length:
1643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATAAT
U12 Branch Point Sequence:
CTCTACATAATG
Flanking Amino Acid:
QVKGKIDTMKKFKSLLIQEL
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
66.4
0.41
1.1
66.3
36.5
Major PPT
95.4
1.02
0.6
88.7
28.3
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
49.4
-0.1
1.9
56.94
44.7

Associated Gene:

Gene:
MED10
Ensembl Gene ID:
ENSAPLG00000018076
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028166
84504505 - 84507781
3277