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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84541910_84545168_R

Intron Information:

Intron Rank:
142637
Intron Class:
major
Intron Phase:
Intron Coordinates:
84541910 - 84545168
Intron Length:
3259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
GTTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
74.8
0.62
1
67
39.8
Major PPT
80.9
0.69
1
82.2
33.3
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024009
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028398
84541311 - 84546575
5265