About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84557351_84581703_F

Intron Information:

Intron Rank:
149918
Intron Class:
major
Intron Phase:
Intron Coordinates:
84557351 - 84581703
Intron Length:
24353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCCTTTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
67.4
0.39
1
59.4
42
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
59.3
0.37
1.6
76.65
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030645
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036641
84556576 - 84582435
25860