About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84581793_84582074_F

Intron Information:

Intron Rank:
149919
Intron Class:
major
Intron Phase:
Intron Coordinates:
84581793 - 84582074
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGCTTC
5'SS Class:
major
3'SS Sequence:
TTCCTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGCTACTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
69.2
38.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84.9
0.78
0.7
77.2
31.6
Minor 5ss
44.3
-0.6
3
58.1
40.3
Minor BPS
65.9
0.58
1.6
79.4
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030645
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036641
84556576 - 84582435
25860