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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84600772_84601541_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84600772 - 84601541
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGTGTGAC
5'SS Class:
major
3'SS Sequence:
TTTTCATCCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTCTTTTCATC
Flanking Amino Acid:
VRLAKQGGRPDLLKHYAPVT
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
0.9
66.3
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
72.2
0.5
1
76.6
31.2
Minor 5ss
33.8
-1.8
3.1
39.3
41.1
Minor BPS
50.7
0
1.7
63.56
36.4

Associated Gene:

Gene:
C7orf57
Ensembl Gene ID:
ENSAPLG00000011654
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012125
84597779 - 84602458
4680