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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84601729_84601779_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84601729 - 84601779
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCGAAAAAT
5'SS Class:
major
3'SS Sequence:
CATCTGTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
AAGTGTTAAACA
Flanking Amino Acid:
SNPPANYFVMKNYVSTLPDF
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.3
0.24
1.2
63.8
36
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
76
0.59
0.9
69.2
36.6
Minor 5ss
20.4
-3.4
3.7
31
36.6
Minor BPS
47.8
-0.1
2
58.24
41.8

Associated Gene:

Gene:
C7orf57
Ensembl Gene ID:
ENSAPLG00000011654
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012125
84597779 - 84602458
4680