About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84601943_84602302_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
84601943 - 84602302
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATGG
5'SS Class:
strong_major
3'SS Sequence:
GAGGCCACACTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GAGTCCTGAAAG
Flanking Amino Acid:
EDKENAEKKKLPMNRRFIHQ
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
65.1
41.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
48
-0.1
1
34.7
35.8
Minor 5ss
43.4
-0.7
2.8
56.2
48
Minor BPS
54.2
-0
1.7
56.2
44.2

Associated Gene:

Gene:
C7orf57
Ensembl Gene ID:
ENSAPLG00000011654
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012125
84597779 - 84602458
4680