Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84621732_84622767_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

84621732 - 84622767

Intron Length:

1036

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGTGAC

5'SS Class:

major

3'SS Sequence:

GCTTTCATTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

TCTGCTTTCATT

Flanking Amino Acid:

YKVGPVLSVSHGMGIPSISI

Intron Amino Acid Position:

111

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.1

68.8

36.5

Major BPS

87.6

0.93

0.9

89.3

Major PPT

81.2

0.7

0.9

77.9

35.2

Minor 5ss

-1.7

3.3

44.3

43.6

Minor BPS

56.8

0.3

1.9

74.65

43.4

Associated Gene:

Gene:

UPP1

Ensembl Gene ID:

ENSAPLG00000011706

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029290

84616760 - 84626854

10095

ENSAPLT00000012201

84617459 - 84627631

10173