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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84622883_84623416_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84622883 - 84623416
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTCCC
5'SS Class:
major
3'SS Sequence:
CTTTTTACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTCTTTTTACT
Flanking Amino Acid:
LIRIGTSGGIGLEPGSVVIT
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
64.3
40
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.6
0.82
0.7
81.9
28.5
Minor 5ss
41.6
-0.9
2.7
54.6
42.5
Minor BPS
66.3
0.59
1.6
84.95
35.1

Associated Gene:

Gene:
UPP1
Ensembl Gene ID:
ENSAPLG00000011706
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012201
84617459 - 84627631
10173
ENSAPLT00000029290
84616760 - 84626854
10095