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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8462903_8483737_F

Intron Information:

Intron Rank:
126254
Intron Class:
major
Intron Phase:
Intron Coordinates:
8462903 - 8483737
Intron Length:
20835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTGCCTTTACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.6
0.51
0.9
65.8
39.7
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
66.1
0.49
1.8
74.54
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017997
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022674
8462780 - 8485247
22468