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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84634129_84636462_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84634129 - 84636462
Intron Length:
2334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTTTTCATTT
Flanking Amino Acid:
KNWLCRVRQPVLSLAEILWP
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.3
29.3
Major BPS
100
1.24
0.5
100
0
Major PPT
90.4
0.91
0.6
88.5
20.9
Minor 5ss
41.2
-1
3
59
45.5
Minor BPS
48.2
-0
1.7
65.49
40.1

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779