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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84652784_84654783_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84652784 - 84654783
Intron Length:
2000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACTAC
5'SS Class:
major
3'SS Sequence:
GTGTCCCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TACTCATCAACT
Flanking Amino Acid:
LLSYTAQLTKIPTGETLDQF
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
64.4
36.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
66.3
0.37
1.1
58.5
43
Minor 5ss
49.6
-0
2.6
66.9
44.7
Minor BPS
61.3
0.43
1.9
79.1
42.4

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779