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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84654963_84664412_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
84654963 - 84664412
Intron Length:
9450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTTATTTGA
5'SS Class:
weak_major
3'SS Sequence:
CTTAATATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
ATGTGCTTAATA
Flanking Amino Acid:
LKLYAQVHFNENLTSVKEFW
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.1
0.07
1.2
53.6
40.2
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
78
0.63
0.9
74.1
39.8
Minor 5ss
37.3
-1.4
2.6
38.8
40.3
Minor BPS
66.2
0.51
1.8
73.39
39

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779