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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84669108_84672102_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84669108 - 84672102
Intron Length:
2995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATT
5'SS Class:
strong_major
3'SS Sequence:
AATCTTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCTTATTAATC
Flanking Amino Acid:
DLHEDIMAEMRASKICQILQ
Intron Amino Acid Position:
1805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
86.9
30.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.4
0.57
0.9
69.2
36
Minor 5ss
39.9
-1.1
3.1
56.9
47.4
Minor BPS
66.9
0.51
1.5
74.76
36.2

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779