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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84673258_84676850_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
84673258 - 84676850
Intron Length:
3593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGAGTG
5'SS Class:
major
3'SS Sequence:
AATAACTCTAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CCTCTCAGAATA
Flanking Amino Acid:
GINLVQDHYQRWLQSVGNLD
Intron Amino Acid Position:
1878

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
63.7
40.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
48.4
-0
1.7
51.1
42.7
Minor 5ss
36.5
-1.5
3.3
47.4
48.1
Minor BPS
45.9
-0.3
1.7
53.95
38.8

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779