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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84679785_84681882_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
84679785 - 84681882
Intron Length:
2098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCAAGAATAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCAAGAATA
Flanking Amino Acid:
NLNLRHIIYTIPSEMGDVLS
Intron Amino Acid Position:
2005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.1
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
51
0.02
1.2
55.1
43
Minor 5ss
37.8
-1.4
3.1
48.2
47.4
Minor BPS
53.5
0.11
2
74.95
35.9

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779