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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84696429_84701701_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84696429 - 84701701
Intron Length:
5273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTGAA
5'SS Class:
major
3'SS Sequence:
TTCCTCCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTAAAACTAAGG
Flanking Amino Acid:
EKLFQKMQVYEIMMDKMLNS
Intron Amino Acid Position:
2203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
70.5
35.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
78.3
0.64
0.7
77.2
24.8
Minor 5ss
31.1
-2.2
3.3
36.8
42.9
Minor BPS
39.4
-0.9
2.2
48.51
43.9

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779