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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84703642_84704454_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84703642 - 84704454
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TATTCTTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TATTCTTCCATA
Flanking Amino Acid:
AMPYPCHTSDLFLNNIGFFF
Intron Amino Acid Position:
2362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
77.7
0.62
0.8
73.3
31.4
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
51.7
0.05
1.9
68.45
38.4

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779