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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84705652_84710020_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84705652 - 84710020
Intron Length:
4369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTATTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGATGTTCACG
Flanking Amino Acid:
QLSFIKQIIMCLLSTTAFGQ
Intron Amino Acid Position:
2511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.2
0.59
0.9
70.7
39.8
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
44
-0.6
2.4
55
46.4

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779