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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84710091_84711788_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84710091 - 84711788
Intron Length:
1698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTACTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTATTACTA
Flanking Amino Acid:
FITFFEGQEIGIQWNNVYQP
Intron Amino Acid Position:
2534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.4
0.46
0.9
62.8
37.4
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
53.7
0.11
1.8
68.77
37.8

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779