About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84712011_84718088_F

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
84712011 - 84718088
Intron Length:
6078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTATGCAAG
5'SS Class:
weak_major
3'SS Sequence:
CTTACAGACTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ATCTCTTGATCT
Flanking Amino Acid:
NATNRFDFSYLPPGWKGACT
Intron Amino Acid Position:
2608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.1
56.2
42.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
62.5
0.28
1
58.7
41.1
Minor 5ss
47.4
-0.3
2.6
62.7
43.2
Minor BPS
57.2
0.3
1.7
74.98
42

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779