About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84718270_84719093_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84718270 - 84719093
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTCTCCTTATTA
Flanking Amino Acid:
GPNGAGKTTVISLLTGLYPP
Intron Amino Acid Position:
2668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.7
41.5
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
81.8
0.72
0.8
76
31.1
Minor 5ss
40.3
-1.1
3.1
54.9
42.3
Minor BPS
65.1
0.47
1.6
70.6
42.5

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779