About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84719309_84721650_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84719309 - 84721650
Intron Length:
2342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGGGTAAG
5'SS Class:
major
3'SS Sequence:
TCTTATTTCAGAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
CTACTCTTATTT
Flanking Amino Acid:
WTNKQLNQQVTLEDVDLLEH
Intron Amino Acid Position:
2740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.1
59
41.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
62.3
0.28
1.7
71.7
37.9
Minor 5ss
30.4
-2.2
3
37.9
41.1
Minor BPS
55.4
0.25
1.6
69.57
41.8

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779