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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84766995_84778247_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84766995 - 84778247
Intron Length:
11253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATAGCC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTTCATAATT
Flanking Amino Acid:
LPPAVDWRQYGITLYSQPYG
Intron Amino Acid Position:
3039

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
61.5
35.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
90.8
0.92
0.6
87.1
23.5
Minor 5ss
31.9
-2.1
3.3
40.1
39.8
Minor BPS
69.1
0.68
1.6
84.17
37

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779