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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84778303_84778914_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84778303 - 84778914
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
CTTTGTATCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTACAA
Flanking Amino Acid:
YGGALLHEDKIMENVRQCGV
Intron Amino Acid Position:
3057

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
72.3
34.3
Major BPS
100
1.24
0.5
100
0
Major PPT
73.8
0.54
0.9
66.3
39.5
Minor 5ss
35.7
-1.6
3
44.1
43.8
Minor BPS
59.9
0.31
2
78.09
38.1

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779