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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84782673_84784070_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84782673 - 84784070
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
TTTAAACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
AATVLLLVLFGYATLPWMYL
Intron Amino Acid Position:
3155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74
36.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.1
0.65
0.9
74.8
39.7
Minor 5ss
40
-1.1
3.2
48.8
47.3
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779