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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84784228_84785023_F

Intron Information:

Intron Rank:
33
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
84784228 - 84785023
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CATGGATTTTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATGGATT
Flanking Amino Acid:
RLLAIISKVQSFQYIYNILK
Intron Amino Acid Position:
3208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
59.8
0.22
1.2
60.7
43.9
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
56.5
0.29
1.8
76.96
39.7

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779